PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc007261.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 587aa    MW: 66789.6 Da    PI: 8.055
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc007261.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.23.6e-2077174291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwev 78 
                              fY+ YA e+GF+vr s  +k+ ++g i  r + Cs+eg+++++++           +++ r+r+++r++C+a+ ++k++kdg++ v
  Itr_sc007261.1_g00001.1  77 FYKLYAVEAGFDVRCSIVRKN-KEGYIEVRYLLCSREGHTTSTTDGtncndedatPNTKTRRRVSNRVDCNARCVIKRRKDGVYAV 161
                              9****************9999.6777**************9998888999999988889999************************ PP

                     FAR1  79 tkleleHnHelap 91 
                              t +e++HnH+l++
  Itr_sc007261.1_g00001.1 162 TIFEEKHNHPLCS 174
                              ***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1777173IPR004330FAR1 DNA binding domain
PfamPF105513.9E-20271342IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MEAIELFEDD NNMDSSDRNV MAEENIVPAP NDAEGNIESS GVHSWQGDNN YFIPECCEKE  60
KPIIRQQFAS MEEGVAFYKL YAVEAGFDVR CSIVRKNKEG YIEVRYLLCS REGHTTSTTD  120
GTNCNDEDAT PNTKTRRRVS NRVDCNARCV IKRRKDGVYA VTIFEEKHNH PLCSESGRMF  180
LKINRSLDVG DQEFISACAK ANIGTSKEFE LYAELTGGFD KVGATCVDFR NCKRDVNAYL  240
HEADAQAVQL RGLFWADPIA KENYQRFGDM VSFDATYSTN RYNMVFVPFT GIDNNKKCVT  300
FGAGLISKEN KESYVWLLNA FKRCMGHIPA CVITDQDPAM KERHKQARLD AECESSLPPT  360
KTPLLIEKHA TSVYTITMFY DVQTEIFEGC FSCKIRNKEQ TDEKHAFVVL KDNDAEMIPT  420
KYVLDRWKKN SCIQETSSTG KGGSGRSSRE EENSKLAPKL CKEFYNYLAL SKENTVKMQE  480
MMTFMMENKE KMVTRNAKAR DKSKNSELLE IFYGAQTSSI ITVKPPQLSK NKGSGKRLKS  540
AREKSVEKKK QDGRKCHYCG QKPARHDFRN CLLNPNSKEN PKNKEKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135154RRRVSNRVDCNARCVIKRRK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-35FAR1-related sequence 5